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  1. Abstract

    During geomagnetic storms relativistic outer radiation belt electron flux exhibits large variations on rapid time scales of minutes to days. Many competing acceleration and loss processes contribute to the dynamic variability of the radiation belts; however, distinguishing the relative contribution of each mechanism remains a major challenge as they often occur simultaneously and over a wide range of spatiotemporal scales. In this study, we develop a new comprehensive model for storm‐time radiation belt dynamics by incorporating electron wave‐particle interactions with parallel propagating whistler mode waves into our global test‐particle model of the outer belt. Electron trajectories are evolved through the electromagnetic fields generated from the Multiscale Atmosphere‐Geospace Environment (MAGE) global geospace model. Pitch angle scattering and energization of the test particles are derived from analytical expressions for quasi‐linear diffusion coefficients that depend directly on the magnetic field and density from the magnetosphere simulation. Using a study of the 17 March 2013 geomagnetic storm, we demonstrate that resonance with lower band chorus waves can produce rapid relativistic flux enhancements during the main phase of the storm. While electron loss from the outer radiation belt is dominated by loss through the magnetopause, wave‐particle interactions drive significant atmospheric precipitation. We also show that the storm‐time magnetic field and cold plasma density evolution produces strong, local variations of the magnitude and energy of the wave‐particle interactions and is critical to fully capturing the dynamic variability of the radiation belts caused by wave‐particle interactions.

     
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    Free, publicly-accessible full text available April 1, 2025
  2. critical to reveal a blackbox model’s decision-making process from raw data to prediction. In this article, we use two real datasets, the MNIST handwritten digits and MIT-BIH Electrocardiogram (ECG) signals, to motivate key characteristics of discriminative features, namely adaptiveness, predictive importance and effectiveness. Then, we develop a localization framework based on adversarial attacks to effectively localize discriminative features. In contrast to existing heuristic methods, we also provide a statistically guaranteed interpretability of the localized features by measuring a generalized partial R2. We apply the proposed method to the MNIST dataset and the MIT-BIH dataset with a convolutional auto-encoder. In the first, the compact image regions localized by the proposed method are visually appealing. Similarly, in the second, the identified ECG features are biologically plausible and consistent with cardiac electrophysiological principles while locating subtle anomalies in a QRS complex that may not be discernible by the naked eye. Overall, the proposed method compares favorably with state-of-the-art competitors. Accompanying this paper is a Python library dnn-locate that implements the proposed approach. 
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    Free, publicly-accessible full text available October 1, 2024
  3. Interchange instability is known to drive fast radial transport of particles in Jupiter's inner magnetosphere. Magnetic flux tubes associated with the interchange instability often coincide with changes in particle distributions and plasma waves, but further investigations are required to understand their detailed characteristics. We analyze representative interchange events observed by Juno, which exhibit intriguing features of particle distributions and plasma waves, including Z‐mode and whistler‐mode waves. These events occurred at an equatorial radial distance of ∼9 Jovian radii on the nightside, with Z‐mode waves observed at mid‐latitude and whistler‐mode waves near the equator. We calculate the linear growth rate of whistler‐mode and Z‐mode waves based on the observed plasma parameters and electron distributions and find that both waves can be locally generated within the interchanged flux tube. Our findings are important for understanding particle transport and generation of plasma waves in the magnetospheres of Jupiter and other planetary systems. 
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    Free, publicly-accessible full text available December 16, 2024
  4. Pradeep Ravikumar (Ed.)
    Statistical inference of directed relations given some unspecified interventions (i.e., the intervention targets are unknown) is challenging. In this article, we test hypothesized directed relations with unspecified interventions. First, we derive conditions to yield an identifiable model. Unlike classical inference, testing directed relations requires identifying the ancestors and relevant interventions of hypothesis-specific primary variables. To this end, we propose a peeling algorithm based on nodewise regressions to establish a topological order of primary variables. Moreover, we prove that the peeling algorithm yields a consistent estimator in low-order polynomial time. Second, we propose a likelihood ratio test integrated with a data perturbation scheme to account for the uncertainty of identifying ancestors and interventions. Also, we show that the distribution of a data perturbation test statistic converges to the target distribution. Numerical examples demonstrate the utility and effectiveness of the proposed methods, including an application to infer gene regulatory networks. The R implementation is available at https://github.com/chunlinli/intdag. 
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  5. Abstract

    Electromagnetic ion cyclotron waves in the Earth's outer radiation belt drive rapid electron losses through wave‐particle interactions. The precipitating electron flux can be high in the hundreds of keV energy range, well below the typical minimum resonance energy. One of the proposed explanations relies on nonresonant scattering, which causes pitch‐angle diffusion away from the fundamental cyclotron resonance. Here we propose the fractional sub‐cyclotron resonance, a second‐order nonlinear effect that scatters particles at resonance ordern = 1/2, as an alternate explanation. Using test‐particle simulations, we evaluate the precipitation ratios of sub‐MeV electrons for wave packets with various shapes, amplitudes, and wave normal angles. We show that the nonlinear sub‐cyclotron scattering produces larger ratios than the nonresonant scattering when the wave amplitude reaches sufficiently large values. The ELFIN CubeSats detected several events with precipitation ratio patterns matching our simulation, demonstrating the importance of sub‐cyclotron resonances during intense precipitation events.

     
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  6. The subphylum Saccharomycotina is a lineage in the fungal phylum Ascomycota that exhibits levels of genomic diversity similar to those of plants and animals. The Saccharomycotina consist of more than 1 200 known species currently divided into 16 families, one order, and one class. Species in this subphylum are ecologically and metabolically diverse and include important opportunistic human pathogens, as well as species important in biotechnological applications. Many traits of biotechnological interest are found in closely related species and often restricted to single phylogenetic clades. However, the biotechnological potential of most yeast species remains unexplored. Although the subphylum Saccharomycotina has much higher rates of genome sequence evolution than its sister subphylum, Pezizomycotina , it contains only one class compared to the 16 classes in Pezizomycotina . The third subphylum of Ascomycota , the Taphrinomycotina , consists of six classes and has approximately 10 times fewer species than the Saccharomycotina . These data indicate that the current classification of all these yeasts into a single class and a single order is an underappreciation of their diversity. Our previous genome-scale phylogenetic analyses showed that the Saccharomycotina contains 12 major and robustly supported phylogenetic clades; seven of these are current families ( Lipomycetaceae , Trigonopsidaceae , Alloascoideaceae , Pichiaceae , Phaffomycetaceae , Saccharomycodaceae , and Saccharomycetaceae ), one comprises two current families ( Dipodascaceae and Trichomonascaceae ), one represents the genus Sporopachydermia , and three represent lineages that differ in their translation of the CUG codon (CUG-Ala, CUG-Ser1, and CUG-Ser2). Using these analyses in combination with relative evolutionary divergence and genome content analyses, we propose an updated classification for the Saccharomycotina , including seven classes and 12 orders that can be diagnosed by genome content. This updated classification is consistent with the high levels of genomic diversity within this subphylum and is necessary to make the higher rank classification of the Saccharomycotina more comparable to that of other fungi, as well as to communicate efficiently on lineages that are not yet formally named. 
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    Free, publicly-accessible full text available May 25, 2024
  7. Abstract

    Electromagnetic ion cyclotron (EMIC) waves can drive radiation belt depletion and Low‐Earth Orbit satellites can detect the resulting electron and proton precipitation. The ELFIN (Electron Losses and Fields InvestigatioN) CubeSats provide an excellent opportunity to study the properties of EMIC‐driven electron precipitation with much higher energy and pitch‐angle resolution than previously allowed. We collect EMIC‐driven electron precipitation events from ELFIN observations and use POES (Polar Orbiting Environmental Satellites) to search for 10s–100s keV proton precipitation nearby as a proxy of EMIC wave activity. Electron precipitation mainly occurs on localized radial scales (∼0.3 L), over 15–24 MLT and 5–8 L shells, stronger at ∼MeV energies and weaker down to ∼100–200 keV. Additionally, the observed loss cone pitch‐angle distribution agrees with quasilinear predictions at ≳250 keV (more filled loss cone with increasing energy), while additional mechanisms are needed to explain the observed low‐energy precipitation.

     
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  8. Abstract

    In this study, using Van Allen Probes observations we identify 81 events of electron flux bursts with butterfly pitch angle distributions for tens of keV electrons with close correlations with chorus wave bursts in the Earth's magnetosphere. We use the high‐rate electron flux data from Magnetic Electron Ion Spectrometer available during 2013–2019 and the simultaneous whistler‐mode wave measurements from Electric and Magnetic Field Instrument Suite and Integrated Science to identify the correlated events. The events are categorized into 67 upper‐band chorus (0.5–0.8fce) dominated events and 14 other events where lower‐band chorus (0.05–0.5fce) has modest or strong amplitudes (fcerepresents electron cyclotron frequency). Each electron flux burst correlated with chorus has a short timescale of ∼1 min or less, suggesting potential nonlinear effects. The statistical distribution of selected electron burst events tends to occur in the post‐midnight sector atL > 5 under disturbed geomagnetic conditions, and is associated with chorus waves with relatively strong magnetic wave amplitude and small wave normal angle. The frequency dependence of the electron flux peaks agrees with the cyclotron resonant condition, indicating the effects of chorus‐induced electron acceleration. Our study provides new insights into understanding the rapid nonlinear interactions between chorus and energetic electrons.

     
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  9. Electron diffraction through a thin patterned silicon membrane can be used to create complex spatial modulations in electron distributions. By precisely varying parameters such as crystallographic orientation and wafer thickness, the intensity of reflections in the diffraction plane can be controlled and by placing an aperture to block all but one spot, we can form an image with different parts of the patterned membrane, as is done for bright-field imaging in microscopy. The patterned electron beams can then be used to control phase and amplitude of subsequent x-ray emission, enabling novel coherent x-ray methods. The electrons themselves can also be used for femtosecond time resolved diffraction and microscopy. As a first step toward patterned beams, we demonstrate experimentally and through simulation the ability to accurately predict and control diffraction spot intensities. We simulate MeV transmission electron diffraction patterns using the multislice method for various crystallographic orientations of a single crystal Si(001) membrane near beam normal. The resulting intensity maps of the Bragg reflections are compared to experimental results obtained at the Accelerator Structure Test Area Ultrafast Electron Diffraction (ASTA UED) facility at SLAC. Furthermore, the fraction of inelastic and elastic scattering of the initial charge is estimated along with the absorption of the membrane to determine the contrast that would be seen in a patterned version of the Si(001) membrane. 
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